Santa Fe
Institute

Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

Song, HS; Giorgi, EE; Ganusov, VV; Cai, FP; Athreya, G; Yoon, H; Carja, O; Hora, B; Hraber, P; Romero-Severson, E; Jiang, CL; Li, XJ; Wang, SY; Li, H; Salazar-Gonzalez, JF; Salazar, MG; Goonetilleke, N; Keele, BF; Montefiori, DC; Cohen, MS; Shaw, GM; Hahn, BH; McMichael, AJ; Haynes, BF; Korber, B; Bhattacharya, T; Gao, F
2018
Nature Communications
9
Abstract

Experimental herbivore exclusion, shrub introduction, and carbon sequestration in alpine plant communities

Sorensen, MV; Graae, BJ; Hagen, D; Enquist, BJ; Nystuen, KO; Strimbeck, R
2018
BMC Ecology
18
Abstract

High mutation rates limit evolutionary adaptation in Escherichia coli

Sprouffske, K; Aguilar-Rodriguez, J; Sniegowski, P; Wagner, A
2018
PLoS Genetics
14
4
Abstract

Feed rate noise modulates autocatalysis and shapes the oscillations of the Belousov-Zhabotinsky reaction in a continuous stirred tank reactor

Srivastava, R; Duenas-Diez, M; Perez-Mercader, J
2018
Reaction Chemistry & Engineering
3
2
216-226
Abstract

Reachability, connectivity, and proximity in chemical spaces

Stadler, P.,Barbel M. R. and Peter F. Stadler
2018
Match-Communications in Mathematical and in Computer Chemistry
80
3
639
Abstract

Feasting and the evolution of cooperative social organizations circa 2300 BP in Paracas culture, southern Peru

Stanish, C; Tantalean, H; Knudson, K
2018
PNAS
115
29
E6716-E6721
Abstract

Integrating systemic risk and risk analysis using copulas

Stefan Hochrainer-Stigler, Georg Pflug, Ulf Dieckmann, Elena Rovenskaya, Stefan Thurner, Sebastian Polend, Gergely Boza, Joanne Linnerooth-Bayer and Ake Braennstroem
2018
International Journal of Disaster Risk Science
9
4
561-567
Abstract

Born to run? Quantifying the balance of prior bias and new information in prey escape decisions

Sutton NM, O’Dwyer, JP
2018
American Naturalist
192
321-331
Abstract

Studying language evolution in the age of big data

Tanmoy Bhattacharya, Nancy Retzlaff, Damián E Blasi, William Croft, Michael Cysouw, Daniel Hruschka, Ian Maddieson , Lydia Müller, Eric Smith, Peter F Stadler, George Starostin, Hyejin Youn
2018
Journal of Language Evolution
Abstract

Quantitative Measurement of naive T cell association With Dendritic cells, FRcs, and Blood Vessels in lymph nodes

Tasnim, H; Fricke, GM; Byrum, JR; Sotiris, JO; Cannon, JL; Moses, ME
2018
Frontiers in Immunology
9
Abstract

Isoprene emission structures tropical tree biogeography and community assembly responses to climate

Taylor, TC; McMahon, SM; Smith, MN; Boyle, B; Violle, C; van Haren, J; Simova, I; Meir, P; Ferreira, LV; de Camargo, PB; da Costa, ACL; Enquist, BJ; Saleska, SR
2018
New Phytologist
220
2
435-446
Abstract

Prevalence and patterns of higher-order drug interactions in Escherichia coli

Tekin, Elif; Cynthia White, Tina Manzhu Kang; Nina Singh; Mauricio Cruz-Loya; Robert Damoiseaux; Van M. Savage and Pamela J. Yeh
2018
NPJ Systems Biology and Applications
4
Abstract

Paleodata for and from archaeology

Timothy A. Kohler, Buckland, K.W. Kintigh, R.K. Bocinsky, A. Brin, A. Gillreath-Brown, B. Ludäscher, T.M. McPhillips, R. Opitz and J. Terstriep
2018
Past Global Changes Magazine
26
2
68-69
Abstract

Paleodata for and from archaeology

Timothy A. Kohler, Buckland, K.W. Kintigh, R.K. Bocinsky, A. Brin, A. Gillreath-Brown, B. Ludäscher, T.M. McPhillips, R. Opitz and J. Terstriep
2018
Past Global Changes Magazine
26
2
68-69
Abstract

Inferring the rules of social interaction in migrating caribou

Torney, CJ; Lamont, M; Debell, L; Angohiatok, RJ; Leclerc, LM; Berdahl, AM
2018
Philosophical Transactions of the Royal Society B - Biological Sciences
373
1746
Abstract

Transient negative effects of antibiotics on phages do not jeopardise the advantages of combination therapies

Torres-Barcelo, C; Gurney, J; Gougat-Barbera, C; Vasse, M; Hochberg, ME
2018
FEMS Microbiology Ecology
94
8
Abstract

Quantitative historical analysis uncovers a single dimension of complexity that structures global variation in human social organization

Turchin, P;,Currie, TE;,Whitehouse, H;,Francois, P;,Feeney, K;,Mullins, D;,Hoyer, D;,Collins, C;,Grohmann, S;,Savage, P;,Mendel-Gleason, G;,Turner, E;,Dupeyron, A;,Cioni, E;,Reddish, J;,Levine, J;,Jordan, G;,Brandl, E;,Williams, A;,Cesaretti, R;,Krueger, M;,Ceccarelli, A;,Figliulo-Rosswurm, J;,Tuan, PJ;,Peregrine, P;,Marciniak, A;,Preiser-Kapeller, J;,Kradin, N;,Korotayev, A;,Palmisano, A;,Baker, D;,Bidmead, J;,Bol, P;,Christian, D;,Cook, C;,Covey, A;,Feinman, G;,Juliusson, AD;,Kristinsson, A;,Miksic, J;,Mostern, R;,Petrie, C;,Rudiak-Gould, P;,ter Haar, B;,Wallace, V;,Mair, V;,Xie, LY;,Baines, J;,Bridges, E;,Manning, J;,Lockhart, B;,Bogaard, A;,Spencer, C.
2018
PNAS
115
2
Abstract

Population Size Affects Adaptation in Complex Ways: Simulations on Empirical Adaptive Landscapes

Vahdati, AR; Wagner, A
2018
Evolutionary Biology
45
2
156-169
Abstract

The architecture of mutualistic networks as an evolutionary spandrel

Valverde, S; Pinero, J; Corominas-Murtra, B; Montoya, J; Joppa, L; Sole, R
2018
Nature Ecology & Evolution
2
1
94-99
Abstract

Whither Archaeology?

van der Leeuw , S.
2018
Japanese Journal of Archaeology
5
95-105
Abstract