Santa Fe
Institute

Papers

Peer-reviewed, published research papers authored by SFI researchers.

Using human mobility data to quantify experienced urban inequalities

Xu, Fengli; Qi Wang; Esteban Moro; Lin Chen; Arianna Salazar Miranda; Marta C. Gonzalez; Michele Tizzoni; Chaoming Song; Carlo Ratti; Luis Bettencourt et al.
2025
Nature Human Behaviour
Abstract

Divergent leaf-root coordination between mangroves and non-mangroves

Wu, Huifang; Qingpei Yang; Jing Chen; Mingzhen Lu; Weighing Ren; Yanmei Xiong; Yuxin Pei; Preetika B. Chand; Oscar J. Valverde-Barrantes; Kingking Cao and Deliang Kong
2025
Journal of Plant Ecology
Abstract

Pandemic monitoring with global aircraft-based wastewater surveillance networks

St-Onge, Guillaume; Jessica T. Davis; Laurent Hebert-Dufresne; Antoine Allard; Alessandra Urbinati; Samuel V. Scarpino; Matteo Chinazzi and Alessandro Vespignani
2025
Nature Medicine
Abstract

Diffusion crossover between ? statistics and Boltzmann-Gibbs statistics in the classical inertial ?−?⁢? ferroma

Rodriguez, Antonio and Constantino Tsallis
2025
Physical Review E
Abstract

Modeling suggests SARS-CoV-2 rebound after nirmatrelvir-ritonavir treatment is driven by target cell preservation coupled with incomplete viral clearance

Phan, Tin; Ruy M. Ribeiro; Gregory E. Edelson; Julie Boucau; Rockib Uddin; Caitlin Marino; May Y. Liew; Mamadou Barry; Alan S. Perelson et al.
2025
Journal of Virology
Abstract

SynTemp: Efficient extraction of graph-based reaction rules from large-scale reaction databases

Phan, Tieu-Long; Klaus Weinbauer; Marcos E. Gonzalez Laffitte; Yingjie Pan; Daniel Merkle; Jakob L. Anderson; Rolf Fagerberg; Christoph Flamm and Peter F. Stadler
2025
Journal of Chemical Information and Modeling
Abstract

Ecohydrological engineering for the sustainable management of water-biota interactions

Perri, Saverio; Simon Levin and Amilcare Porporato
2025
Ecohydrology
18
1
Abstract

Universal statistics of competition in democratic elections

Pal, Ritam; Aanjaneya Kumar and M. S. Santhanam
2025
Physical Review Letters
134
1
Abstract

Global bifurcation in a virus, defective genomes, satellite RNAs tripartite system: Breakdown of a coexistence quasi-neutral curve

Llopis-Almela, Oriol; J. Tomas Lazario; Santiago F. Elena and Josep Sardanyes
2025
Chaos Solutions & Fractals
192
Abstract

Chemical degradation as an enabling pathway to polymersome functionalization

LIn, Chenyu; Kumar Siddharth and Juan Perez-Mercader
2025
RSC Advances
15
6
4693-4700
Abstract

Where did real representations go? Commentary on: The concept of representation in the brain sciences: The current status and ways forward by Favela and Machery

Krakauer, John W.
2025
Mind & Language
Abstract

Skill dependencies uncover nested human capital

Hosseinioun, Meh; Frank Neffke; Letian Zhang and Hyejin Youn
2025
Nature Human Behaviour
Abstract

Model predicted human mobility explains COVID-19 transmission in urban space without behavioral data

Han, Zhenyu; Fengli Xu; Yong Li; Tao Jiang and James Evans
2025
Scientific Reports
15
1
Abstract

An enigmatic wild passerine mortality event in the Eastern United States

Greening, Sabrina S.; Julie C. Ellis; Nicole L. Lewis; David B. Needle… C. Brandon Ogbunugafor et al.
2025
Veterinary Sciences
12
1
Abstract

Quantum evolution equations through statistical methods: From fluctuations to nonlinearity

Fuentes, Miguel and Sergio Curlier
2025
Chaos Solutions & Fractals
35
2
Abstract

Estimating realized relatedness in free-ranging macaques by inferring identity-by-descent segments

Freudiger, Annika; Vladimir M. Jovanovic; Yilei Huang; Noah Snyder-Mackler; Donald F. Conrad; Brian Miller; Michael J. Montague... Peter F. Stadler et al.
2025
Proceedings of the National Academy of Sciences of the United States of America
122
3
Abstract

Care of the dead: Ancestors, traditions & the life of cultures

Ford, Phil; Jacob G. Foster and J. F. Martel
2025
Daedalus
154
1
166-182
Abstract

Comorbidity networks from population-wide health data: Aggregated data of 8.9 hospital patients (1997-2014)

Dervic, Elma; Katharina Ledebur; Stefan Thurner and Peter Klimek
2025
Scientific Data
12
1
Abstract

Rewilding catalyzes maturation of the humoral immune system

Chen, Ying-Han; Kimberly Zaldana; Frank Yeung; Ivan Vujkovic-Cvijin; Alexander E. Downie; Jian-Da Lin; Yi Yang… Andrea L. Graham et al.
2025
Science Advances
11
10
Abstract

An “opinion reduction number” for infodemics in a bounded-confidence content-spreading process on networks

Brooks, Heather Z. and Mason A. Porter
2025
Chaos Solutions & Fractals
35
1
Abstract